Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs75870176 chr5:154260259 T/C 0 494 30.08 35.57 4.87 KM Plot
PRAD rs759197 chr16:5006076 C/T 0.000148 484 31.27 29.95 26.37 KM Plot
PRAD rs75950294 chr9:72867629 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs75959757 chr7:135170755 G/A 1.94E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs75963589 chr12:52903112 C/T 9.59E-8 481 30.73 35.77 23.67 KM Plot
PRAD rs75966707 chr6:43356743 A/C 4.63E-10 486 31.27 29.4 44.3 KM Plot
PRAD rs75967767 chr1:1158948 A/G 2.77E-10 486 31.13 30.73 13.73 KM Plot
PRAD rs7598728 chr2:232086055 C/T 7.51E-5 486 32.32 28.72 31.25 KM Plot
PRAD rs75993292 chr6:52946605 G/A 8.1E-12 484 31.27 30.07 19.43 KM Plot
PRAD rs760114 chr19:45464963 C/T 4.67E-5 486 30.87 30.75 45.2 KM Plot
PRAD rs76037357 chr15:83399490 A/G 9.74E-6 492 30.97 30.55 31.27 KM Plot
PRAD rs7603884 chr2:47156376 A/G 6.41E-6 492 30.8 32.4 36.85 KM Plot
PRAD rs7604322 chr2:107440379 A/G 0.000115 492 30.87 30.7 32.63 KM Plot
PRAD rs7604530 chr2:107440581 A/C 3.36E-5 492 30.97 30.53 32.63 KM Plot
PRAD rs76054058 chr7:135093486 G/C 2.13E-9 491 30.8 31.33 3.03 KM Plot